PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000835t1
Common NameTCM_000835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 187aa    MW: 21691.4 Da    PI: 10.1585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000835t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.1e-1178123550
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                       ++ rr+++NRe+ArrsR RK++ +e+L++ v  L  eN++L ++l 
  Thecc1EG000835t1  78 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELTNRLR 123
                       5789*************************************98775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1274138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.72676122IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-1178126No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-978149No hitNo description
PfamPF001702.0E-878123IPR004827Basic-leucine zipper domain
CDDcd147027.37E-2079130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMSTVPANVS PEPMLSNDLF PAFESGFTPW DCSELFSTTL STGPARSGSG SDEPNQNQTN  60
SNSGSDEPNQ LVSIIDERKR RRMISNRESA RRSRMRKQKH LENLRNQVNR LRIENRELTN  120
RLRFVLYHCH RVRTDNDRLR SEYSMLQQKF WDIRQILLFK QLQQFSSAWP CNNVTAMSEQ  180
TPPLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27798RKRRRMISNRESARRSRMRKQK
39097RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047594.11e-136Basic leucine-zipper 5, putative
TrEMBLA0A061DIP81e-136A0A061DIP8_THECC; Basic leucine-zipper 5, putative
STRINGVIT_00s0541g00020.t014e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.15e-47basic leucine-zipper 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]